In vaishnava Temples Ekadashi is performed as by Vaishnava sampradaya.
Is there is any instructions about how to perform Ekadashi in Shiva temples in any Puranas/ Sacred books?
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I am not aware in which book you will get the instructions. However in the Tulsi Das Ramayana its clearly mentioned that Lord shiva loves those devotes who worship Ram(Lord Vishnu) and Lord Vishu Loves those who worship-Lord Shiva . So I believe that on Ekadashi we can perform Abhishek on Lord Shiva's shivLing ,which makes him happy, as its the day devoted to his beloved lord Vishu and anyone who praise Lord Shiva on the day, Will get blessings from both Lord shiva and Lord Vishu.